importBigWig: Import and optionally summarize a bigwig at a given...

View source: R/utils.R

importBigWigR Documentation

Import and optionally summarize a bigwig at a given resolution

Description

Import and optionally summarize a bigwig at a given resolution

Usage

importBigWig(
  bw,
  bins = NULL,
  summarize = FALSE,
  genome = c("hg19", "hg38", "mm9", "mm10")
)

Arguments

bw

Path a bigwig file

bins

Optional set of bins as a GRanges to summarize the bigwig to

summarize

Whether to perform mean summarization

genome

Which genome is the bigwig from ("hg19", "hg38", "mm9", "mm10")

Value

SummerizedExperiment object with rowRanges corresponding to summarized features


biobenkj/compartmentalizer documentation built on Oct. 13, 2023, 5:26 p.m.