importBigWig: Import and optionally summarize a bigwig at a given...

In biobenkj/compartmentalizer: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq

Import and optionally summarize a bigwig at a given resolution

Description

Import and optionally summarize a bigwig at a given resolution

Usage

importBigWig(
  bw,
  bins = NULL,
  summarize = FALSE,
  genome = c("hg19", "hg38", "mm9", "mm10")
)

Arguments

bw	Path a bigwig file
bins	Optional set of bins as a GRanges to summarize the bigwig to
summarize	Whether to perform mean summarization
genome	Which genome is the bigwig from ("hg19", "hg38", "mm9", "mm10")

Value

SummerizedExperiment object with rowRanges corresponding to summarized features

biobenkj/compartmentalizer documentation built on Oct. 13, 2023, 5:26 p.m.