dot-jse: James-Stein estimator

In biobenkj/compartmentalizer: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq

James-Stein estimator

Description

James-Stein estimator

Usage

.jse(x, grand.mean = NULL, targets = NULL)

Arguments

x	input vector of binned means across samples
grand.mean	The global mean across samples
targets	Samples to shrink towards \hat{\theta}_{JS+} = \left(1 - \frac{(m - 3)\sigma^2}{||\textbf{y} - \nu||^2}\right)

biobenkj/compartmentalizer documentation built on June 10, 2025, 1:57 a.m.