cleanAssayRows: Remove rows with NAs exceeding a threshold. See...
In biobenkj/compartmentalizer: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq
cleanAssayRows R Documentation
Remove rows with NAs exceeding a threshold. See cleanAssay()
Description
Remove rows with NAs exceeding a threshold. See cleanAssay()
Usage
cleanAssayRows(se, na.max = 0.8, assay = c("array", "bisulfite"))
Arguments
se
Input SummarizedExperiment object
na.max
The maximum number of NAs allowed as a fraction
assay
The type of assay we are working with
Value
A filtered matrix
Examples
if (requireNamespace("minfi", quietly = TRUE)) {
data("array_data_chr14", package = "compartmap")
compartmap:::cleanAssayRows(array.data.chr14, assay = "array")
}
biobenkj/compartmentalizer documentation built on June 10, 2025, 1:57 a.m.
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| cleanAssayRows | R Documentation |
Remove rows with NAs exceeding a threshold. See cleanAssay()
Description
Remove rows with NAs exceeding a threshold. See cleanAssay()
Usage
cleanAssayRows(se, na.max = 0.8, assay = c("array", "bisulfite"))
Arguments
se |
Input SummarizedExperiment object |
na.max |
The maximum number of NAs allowed as a fraction |
assay |
The type of assay we are working with |
Value
A filtered matrix
Examples
if (requireNamespace("minfi", quietly = TRUE)) {
data("array_data_chr14", package = "compartmap")
compartmap:::cleanAssayRows(array.data.chr14, assay = "array")
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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