ISoLDE: Integrative Statistics of alleLe Dependent Expression

This package provides ISoLDE a new method for identifying imprinted genes. This method is dedicated to data arising from RNA sequencing technologies. The ISoLDE package implements original statistical methodology described in the publication below.

Author
Christelle Reynès [aut, cre], Marine Rohmer [aut], Guilhem Kister [aut]
Date of publication
None
Maintainer
Christelle Reynès <christelle.reynes@igf.cnrs.fr>
License
GPL (>= 2.0)
Version
1.2.0
URLs

View on Bioconductor

Man pages

filteredASRcounts
NORMALIZED AND FILTERED ALLELE SPECIFIC READ (ASR) COUNTS FOR...
filterT
FILTERING GENES BEFORE STATISTICAL ANALYSIS
ISoLDE-package
INTEGRATIVE STATISTICS OF ALLELE DEPENDENT EXPRESSION
isolde_test
Statistical analysis of Allele specific read (ASR) counts
normASRcounts
NORMALIZED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN...
rawASRcounts
RAW ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH...
readNormInput
READ THE NORMALIZED DATA FILE
readRawInput
READ THE RAW DATA FILE
readTarget
READ THE TARGET FILE
target
METADATA ABOUT THE ASR COUNT DATA.

Files in this package

ISoLDE/DESCRIPTION
ISoLDE/NAMESPACE
ISoLDE/R
ISoLDE/R/Invisible_functions.R
ISoLDE/R/filterT.R
ISoLDE/R/isolde_test.R
ISoLDE/R/readNormInput.R
ISoLDE/R/readRawInput.R
ISoLDE/R/readTarget.R
ISoLDE/README
ISoLDE/data
ISoLDE/data/filteredASRcounts.rda
ISoLDE/data/normASRcounts.rda
ISoLDE/data/rawASRcounts.rda
ISoLDE/data/target.rda
ISoLDE/inst
ISoLDE/inst/NEWS
ISoLDE/inst/extdata
ISoLDE/inst/extdata/normASRcounts_file.txt
ISoLDE/inst/extdata/rawASRcounts_file.txt
ISoLDE/inst/extdata/target_file.txt
ISoLDE/man
ISoLDE/man/ISoLDE-package.Rd
ISoLDE/man/filterT.Rd
ISoLDE/man/filteredASRcounts.Rd
ISoLDE/man/isolde_test.Rd
ISoLDE/man/normASRcounts.Rd
ISoLDE/man/rawASRcounts.Rd
ISoLDE/man/readNormInput.Rd
ISoLDE/man/readRawInput.Rd
ISoLDE/man/readTarget.Rd
ISoLDE/man/target.Rd
ISoLDE/src
ISoLDE/src/Isolde.c
ISoLDE/src/Makevars
ISoLDE/tests
ISoLDE/tests/testsIsolde.R
ISoLDE/vignettes
ISoLDE/vignettes/ISoLDE_result_on_example.pdf
ISoLDE/vignettes/vignette.Rnw
ISoLDE/vignettes/workflow.pdf