ISoLDE: Integrative Statistics of alleLe Dependent Expression

This package provides ISoLDE a new method for identifying imprinted genes. This method is dedicated to data arising from RNA sequencing technologies. The ISoLDE package implements original statistical methodology described in the publication below.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ISoLDE")
AuthorChristelle Reynès [aut, cre], Marine Rohmer [aut], Guilhem Kister [aut]
Bioconductor views Epigenetics GeneExpression GeneRegulation GeneSetEnrichment GeneticVariability Genetics MathematicalBiology MultipleComparison RNASeq SNP Sequencing Transcription
Date of publicationNone
MaintainerChristelle Reynès <christelle.reynes@igf.cnrs.fr>
LicenseGPL (>= 2.0)
Version1.4.0
www.r-project.org

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/Invisible_functions.R R/filterT.R R/isolde_test.R R/readNormInput.R R/readRawInput.R R/readTarget.R
README
data
data/filteredASRcounts.rda
data/normASRcounts.rda
data/rawASRcounts.rda
data/target.rda
inst
inst/NEWS
inst/extdata
inst/extdata/normASRcounts_file.txt
inst/extdata/rawASRcounts_file.txt
inst/extdata/target_file.txt
man
man/ISoLDE-package.Rd man/filterT.Rd man/filteredASRcounts.Rd man/isolde_test.Rd man/normASRcounts.Rd man/rawASRcounts.Rd man/readNormInput.Rd man/readRawInput.Rd man/readTarget.Rd man/target.Rd
src
src/Isolde.c
src/Makevars
tests
tests/testsIsolde.R
vignettes
vignettes/ISoLDE_result_on_example.pdf
vignettes/vignette.Rnw
vignettes/workflow.pdf

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