genetics: Population Genetics

Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...

AuthorGregory Warnes, with contributions from Gregor Gorjanc, Friedrich Leisch, and Michael Man.
Date of publication2013-09-03 12:06:28
MaintainerGregory Warnes <greg@warnes.net>
LicenseGPL
Version1.3.8.1

View on CRAN

Files in this package

genetics
genetics/TODO
genetics/inst
genetics/inst/NEWS
genetics/inst/ChangeLog
genetics/inst/doc
genetics/inst/doc/Rnews.sty
genetics/inst/doc/example.R
genetics/inst/doc/genetics_article.pdf
genetics/inst/doc/LD.pdf
genetics/inst/doc/example_data.csv
genetics/inst/doc/genetics_article.tex
genetics/inst/doc/make_example_data.R
genetics/tests
genetics/tests/makeGenotype_with_sep.R
genetics/tests/test.NA.R
genetics/tests/ci.balance.R
genetics/NAMESPACE
genetics/NEWS
genetics/data
genetics/data/gregorius.rda
genetics/R
genetics/R/plot.genotype.R genetics/R/groupGenotype.R genetics/R/locus.R genetics/R/plot.LD.R genetics/R/LD.R genetics/R/write.pedigree.file.R genetics/R/power.casectl.R genetics/R/hapmcmc.R genetics/R/HWE.test.data.frame.R genetics/R/print.LD.R genetics/R/HWE.test.R genetics/R/ci.balance.R genetics/R/write.pop.file.R genetics/R/genotype.R genetics/R/HWE.exact.R genetics/R/HWE.chisq.R genetics/R/diseq.R genetics/R/makeGenotypes.R genetics/R/expectedGenotypes.R genetics/R/order.genotype.R genetics/R/gregorius.R genetics/R/summary.genotype.R genetics/R/zzz.R genetics/R/power.casectl.plot.R
genetics/MD5
genetics/DESCRIPTION
genetics/ChangeLog
genetics/man
genetics/man/expectedGenotypes.Rd genetics/man/LD.Rd genetics/man/HWE.exact.Rd genetics/man/undocumented.Rd genetics/man/ci.balance.Rd genetics/man/groupGenotype.Rd genetics/man/write.pop.file.Rd genetics/man/HWE.chisq.Rd genetics/man/genotype.Rd genetics/man/print.LD.Rd genetics/man/summary.genotype.Rd genetics/man/makeGenotypes.Rd genetics/man/depreciated.Rd genetics/man/order.genotype.Rd genetics/man/diseq.Rd genetics/man/homozygote.Rd genetics/man/gregorius.Rd genetics/man/plot.genotype.Rd genetics/man/HWE.test.Rd genetics/man/locus.Rd
genetics/.Rinstignore

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