intansv: Integrative analysis of structural variations

This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.

AuthorWen Yao <ywhzau@gmail.com>
Date of publicationNone
MaintainerWen Yao <ywhzau@gmail.com>
LicenseArtistic-2.0
Version1.12.0

View on Bioconductor

Files

intansv/DESCRIPTION
intansv/NAMESPACE
intansv/NEWS
intansv/R
intansv/R/geneAnnotation.R intansv/R/methodsMerge.R intansv/R/plotChromosome.R intansv/R/plotRegion.R intansv/R/readBreakDancer.R intansv/R/readCnvnator.R intansv/R/readDelly.R intansv/R/readLumpy.R intansv/R/readPindel.R intansv/R/readSoftSearch.R intansv/R/readSvseq.R intansv/R/svAnnotation.R
intansv/README.md
intansv/build
intansv/build/vignette.rds
intansv/inst
intansv/inst/doc
intansv/inst/doc/intansvOverview.R
intansv/inst/doc/intansvOverview.Rnw
intansv/inst/doc/intansvOverview.pdf
intansv/inst/extdata
intansv/inst/extdata/ZS97.breakdancer.sv
intansv/inst/extdata/ZS97.lumpy.pesr.bedpe
intansv/inst/extdata/ZS97.softsearch
intansv/inst/extdata/chr05_chr10.gff3
intansv/inst/extdata/cnvnator
intansv/inst/extdata/cnvnator/ZS97.chr05.out
intansv/inst/extdata/cnvnator/ZS97.chr10.out
intansv/inst/extdata/delly
intansv/inst/extdata/delly/ZS97.bam.del.vcf
intansv/inst/extdata/delly/ZS97.bam.dup.vcf
intansv/inst/extdata/delly/ZS97.bam.inv.vcf
intansv/inst/extdata/genome.anno.RData
intansv/inst/extdata/pindel
intansv/inst/extdata/pindel/ZS97.chr05_D
intansv/inst/extdata/pindel/ZS97.chr05_INV
intansv/inst/extdata/pindel/ZS97.chr05_TD
intansv/inst/extdata/pindel/ZS97.chr10_D
intansv/inst/extdata/pindel/ZS97.chr10_INV
intansv/inst/extdata/pindel/ZS97.chr10_TD
intansv/inst/extdata/svseq2
intansv/inst/extdata/svseq2/ZS97.bam.chr10.svseq.del
intansv/man
intansv/man/geneAnnotation.Rd intansv/man/methodsMerge.Rd intansv/man/plotChromosome.Rd intansv/man/plotRegion.Rd intansv/man/readBreakDancer.Rd intansv/man/readCnvnator.Rd intansv/man/readDelly.Rd intansv/man/readLumpy.Rd intansv/man/readPindel.Rd intansv/man/readSoftSearch.Rd intansv/man/readSvseq.Rd intansv/man/svAnnotation.Rd
intansv/vignettes
intansv/vignettes/intansvOverview.Rnw
intansv/vignettes/intansvOverview.bib

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