Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.
|Author||Rodrigo Dalmolin, Mauro Castro|
|Bioconductor views||GeneRegulation Genetics SystemsBiology|
|Date of publication||2018-08-19|
|Maintainer||Mauro Castro <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on Bioconductor|
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