geneplast: Evolutionary and plasticity analysis of orthologous groups

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

Package details

AuthorRodrigo Dalmolin, Mauro Castro
Bioconductor views GeneRegulation Genetics SystemsBiology
MaintainerMauro Castro <mauro.a.castro@gmail.com>
LicenseGPL (>= 2)
Version1.16.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneplast")

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geneplast documentation built on Nov. 8, 2020, 7:57 p.m.