geneplast: Evolutionary and plasticity analysis based on orthologous groups distribution

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

AuthorRodrigo Dalmolin, Mauro Castro
Date of publicationNone
MaintainerMauro Castro <mauro.a.castro@gmail.com>
LicenseGPL (>= 2)
Version1.0.0

View on Bioconductor

Files

geneplast/DESCRIPTION
geneplast/NAMESPACE
geneplast/R
geneplast/R/AllChecks.R geneplast/R/AllClasses.R geneplast/R/AllContructors.R geneplast/R/AllGenerics.R geneplast/R/AllMethods.R geneplast/R/AllPlots.R geneplast/R/AllSupplements.R
geneplast/build
geneplast/build/vignette.rds
geneplast/data
geneplast/data/datalist
geneplast/data/gpdata.gs.RData
geneplast/inst
geneplast/inst/CITATION
geneplast/inst/NEWS.Rd
geneplast/inst/doc
geneplast/inst/doc/geneplast.R
geneplast/inst/doc/geneplast.Rnw
geneplast/inst/doc/geneplast.pdf
geneplast/inst/unitTests
geneplast/inst/unitTests/test_gp.R
geneplast/man
geneplast/man/OGP-class.Rd geneplast/man/OGR-class.Rd geneplast/man/geneplast-package.Rd geneplast/man/gpdata.Rd geneplast/man/gplast.Rd geneplast/man/gplast.get.Rd geneplast/man/gplast.preprocess.Rd geneplast/man/groot.Rd geneplast/man/groot.get.Rd geneplast/man/groot.plot.Rd geneplast/man/groot.preprocess.Rd
geneplast/tests
geneplast/tests/runTests.R
geneplast/vignettes
geneplast/vignettes/Bioc.bib
geneplast/vignettes/Fig1.pdf
geneplast/vignettes/Fig2.pdf
geneplast/vignettes/geneplast.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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