ppidata: A pre-processed igraph object for the geneplast package.
In geneplast: Evolutionary and plasticity analysis of orthologous groups
Description
Usage
Format
Details
Value
References
Examples
Description
An igraph object used to demonstrate geneplast main functions.
Usage
1
Format
ppi.gsan igraph object.
Details
Protein-protein interactions (PPI) mapped to H. sapiens apoptosis and genome-stability genes. The PPI information is derived from the STRING database, release 9.1, using combined score >=900 (Franceschini et al., 2013).
Value
an igraph object.
References
Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013 Jan;41(Database issue):D808-15. doi: 10.1093/nar/gks1094. Epub 2012 Nov 29.
Examples
1
geneplast documentation built on Nov. 8, 2020, 7:57 p.m.
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Description Usage Format Details Value References Examples
Description
An igraph object used to demonstrate geneplast main functions.
Usage
1 |
Format
ppi.gsan igraph object.
Details
Protein-protein interactions (PPI) mapped to H. sapiens apoptosis and genome-stability genes. The PPI information is derived from the STRING database, release 9.1, using combined score >=900 (Franceschini et al., 2013).
Value
an igraph object.
References
Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013 Jan;41(Database issue):D808-15. doi: 10.1093/nar/gks1094. Epub 2012 Nov 29.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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