ppidata: A pre-processed igraph object for the geneplast package.

Description Usage Format Details Value References Examples

Description

An igraph object used to demonstrate geneplast main functions.

Usage

1

Format

ppi.gsan igraph object.

Details

Protein-protein interactions (PPI) mapped to H. sapiens apoptosis and genome-stability genes. The PPI information is derived from the STRING database, release 9.1, using combined score >=900 (Franceschini et al., 2013).

Value

an igraph object.

References

Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013 Jan;41(Database issue):D808-15. doi: 10.1093/nar/gks1094. Epub 2012 Nov 29.

Examples

1

geneplast documentation built on Nov. 1, 2018, 2:27 a.m.