podkat: Position-Dependent Kernel Association Test
Version 1.8.0

This package provides an association test that is capable of dealing with very rare and even private variants. This is accomplished by a kernel-based approach that takes the positions of the variants into account. The test can be used for pre-processed matrix data, but also directly for variant data stored in VCF files. Association testing can be performed whole-genome, whole-exome, or restricted to pre-defined regions of interest. The test is complemented by tools for analyzing and visualizing the results.

Package details

AuthorUlrich Bodenhofer
Bioconductor views Annotation DataImport Genetics Sequencing VariantAnnotation WholeGenome
MaintainerUlrich Bodenhofer <[email protected]>
LicenseGPL (>= 2)
Version1.8.0
URL http://www.bioinf.jku.at/software/podkat/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("podkat")

Try the podkat package in your browser

Any scripts or data that you put into this service are public.

podkat documentation built on May 31, 2017, 10:55 a.m.