Man pages for podkat
Position-Dependent Kernel Association Test

assocTest-methodsPerform Association Test
AssocTestResult-classClass 'AssocTestResult'
AssocTestResultRanges-classClass 'AssocTestResultRanges'
computeKernelCompute Kernel Matrix
filterResult-methodsFilter Association Test Results According to p-Values or...
GenotypeMatrix-classClass 'GenotypeMatrix'
genotypeMatrix-methodsConstructors for Creating 'GenotypeMatrix' Objects
hgAArtificial Human Chromosome for Testing Purposes
NullModel-classClass 'NullModel'
nullModel-methodsCreate Null Model for Association Test
p.adjust-methodsAdjust p-Value for Multiple Tests
partitionRegions-methodsPartition Genomic Regions
plot-methodsPlotting functions
podkat-packagePODKAT Package
print-methodsPrint Association Test Results
qqplot-methodsQuantile-Quantile Plots
readGenotypeMatrix-methodsRead from VCF File
readRegionsFromBedFileRead Genomic Regions from BED File
readSampleNamesFromVcfHeaderRead Sample Names from VCF File Header
readVariantInfo-methodsRead information about variants from VCF file
sort-methodsSort Association Test Results
split-methodsSplit 'GRanges' Object
unmasked-datasetsUnmasked Regions of Human Genomes
unmaskedRegionsExtract Unmasked Regions from 'MaskedBSgenome' Object
VariantInfo-classClass 'VariantInfo'
weightFuncsWeighting Functions
weights-methodsExtract Contribution Weights of Variants
podkat documentation built on Nov. 1, 2018, 3:03 a.m.