CexoR: An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates

Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function (package 'skellam') is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Irreproducible discovery rate for overlapping peak-pairs across biological replicates is estimated using the package 'idr'.

Package details

AuthorPedro Madrigal <[email protected]>
Bioconductor views Genetics Sequencing Transcription
MaintainerPedro Madrigal <[email protected]>
LicenseArtistic-2.0 | GPL-2 + file LICENSE
Package repositoryView on Bioconductor
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CexoR documentation built on Nov. 1, 2018, 3:32 a.m.