Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function (package 'skellam') is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Irreproducible discovery rate for overlapping peak-pairs across biological replicates is estimated using the package 'idr'.
|Author||Pedro Madrigal <[email protected]>|
|Bioconductor views||Genetics Sequencing Transcription|
|Maintainer||Pedro Madrigal <[email protected]>|
|License||Artistic-2.0 | GPL-2 + file LICENSE|
|Package repository||View on Bioconductor|
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