CexoR: An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Version 1.14.0

Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function (package 'skellam') is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Irreproducible discovery rate for overlapping peak-pairs across biological replicates is estimated using the package 'idr'.

Package details

AuthorPedro Madrigal <pm12@sanger.ac.uk>
Bioconductor views Genetics Sequencing Transcription
MaintainerPedro Madrigal <pm12@sanger.ac.uk>
LicenseArtistic-2.0 | GPL-2 + file LICENSE
Version1.14.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CexoR")

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CexoR documentation built on May 31, 2017, 10:56 a.m.