scoreInvHap: Get inversion status in predefined regions
Version 1.0.0

scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for two well known inversions (8p23 and 17q21.31) and for two additional regions.

Package details

AuthorCarlos Ruiz [aut, cre], Juan R. Gonzalez [aut]
Bioconductor views Genetics GenomicVariation SNP
MaintainerCarlos Ruiz <[email protected]>
Licensefile LICENSE
Version1.0.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("scoreInvHap")

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scoreInvHap documentation built on Nov. 17, 2017, 9:02 a.m.