scoreInvHap: Get inversion status in predefined regions

scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 21 inversions.

Package details

AuthorCarlos Ruiz [aut, cre], Dolors Pelegrí-Sisó [aut], Juan R. Gonzalez [aut]
Bioconductor views Genetics GenomicVariation SNP
MaintainerCarlos Ruiz <>
Licensefile LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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scoreInvHap documentation built on Feb. 6, 2021, 2 a.m.