DBChIP: Differential Binding of Transcription Factor with ChIP-seq

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

AuthorKun Liang
Date of publicationNone
MaintainerKun Liang <kliang@stat.wisc.edu>
LicenseGPL (>= 2)
Version1.18.0

View on Bioconductor

Files in this package

DBChIP/DESCRIPTION
DBChIP/NAMESPACE
DBChIP/R
DBChIP/R/DBChIP.R DBChIP/R/NCIS.R
DBChIP/build
DBChIP/build/vignette.rds
DBChIP/data
DBChIP/data/PHA4.rda
DBChIP/data/datalist
DBChIP/inst
DBChIP/inst/doc
DBChIP/inst/doc/DBChIP.R
DBChIP/inst/doc/DBChIP.Rnw
DBChIP/inst/doc/DBChIP.pdf
DBChIP/inst/ext
DBChIP/inst/ext/L1.binding.txt
DBChIP/inst/ext/emb.binding.txt
DBChIP/inst/unitTests
DBChIP/inst/unitTests/runTests.R
DBChIP/inst/unitTests/test_all.R
DBChIP/man
DBChIP/man/DBChIP-package.Rd DBChIP/man/DBChIP.Rd DBChIP/man/PHA4.Rd DBChIP/man/binding.site.list.Rd DBChIP/man/chip.data.list.Rd DBChIP/man/conds.Rd DBChIP/man/get.site.count.Rd DBChIP/man/input.data.list.Rd DBChIP/man/load.data.Rd DBChIP/man/plotPeak.Rd DBChIP/man/read.binding.site.list.Rd DBChIP/man/report.peak.Rd DBChIP/man/site.merge.Rd DBChIP/man/test.diff.binding.Rd
DBChIP/tests
DBChIP/tests/runTests.R
DBChIP/vignettes
DBChIP/vignettes/DBChIP.Rnw
DBChIP/vignettes/DBChIP.bib

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