read.binding.site.list: read.binding.site.list

In DBChIP: Differential Binding of Transcription Factor with ChIP-seq

Description

Process the list of binding sites into an internal format

Usage

read.binding.site.list(binding.site.list)

Arguments

binding.site.list

a list of data.frames. Each data.frame corresponds to one condition in comparison and has three fields, chr, pos and weight, to indicate the binding location and strength.

Details

The binding site for each condition is split into a list where binding sites are grouped according to their chromosomes.

Value

A list of conditions, each of which is a list of binding sites in a certain chromosome. The binding sites are in data.frames with two fields, pos and weight, to indicate the binding location and strength.

See Also

DBChIP

Examples

data("PHA4")
bs.list <- read.binding.site.list(binding.site.list)
str(bs.list)

DBChIP documentation built on Nov. 8, 2020, 8:27 p.m.