chip.data.list: ChIP data of transcription factor PHA-4/FOXA in _C.elegans_

In DBChIP: Differential Binding of Transcription Factor with ChIP-seq

Description

This data set contains parts of ChIP-seq data of transcription factor PHA-4/FOXA in C.elegans. Only ChIP data in chromosome I with position < 0.9M bp are included.

Usage

data("PHA4")

Format

List of 4 elements: "emb_rep1", "emb_rep2", "L1_rep1" and "L1_rep2". Each element is a data.frame with fields: chr, strand and pos.

Source

Zhong et al. (2010), Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response, PLoS Genetics, 6, e1000848.

See Also

PHA4

Examples

data(PHA4)
names(chip.data.list)
head(chip.data.list[["emb_rep1"]])

DBChIP documentation built on Nov. 8, 2020, 8:27 p.m.