This data set contains parts of ChIP-seq data of transcription factor PHA-4/FOXA in C.elegans. ChIP and control data and identified binding sites in chromosome I with position < 0.9M bp are included.
PHA4 has three elements:
binding.site.list a list of binding sites for embryonic and L1 conditions
chip.data.list a list of ChIP reads data for embryonic and L1 conditions
input.data.list a list of control reads data for embryonic and L1 conditions
conds a vector of conditions of ChIP libraries.
Zhong et al. (2010), Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response, PLoS Genetics, 6, e1000848.
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