GeneGeneInteR: Tools for Testing Gene-Gene Interaction at the Gene Level

The aim of this package is to propose several methods for testing gene-gene interaction in case-control association studies. Such a test can be done by aggregating SNP-SNP interaction tests performed at the SNP level (SSI) or by using gene-gene multidimensionnal methods (GGI) methods. The package also proposes tools for a graphic display of the results.

AuthorMathieu Emily, Nicolas Sounac, Florian Kroell, Magalie Houee-Bigot
Date of publicationNone
MaintainerMathieu Emily <mathieu.emily@agrocampus-ouest.fr>, Magalie Houee-Bigot <magalie.houee@agrocampus-ouest.fr>
LicenseGPL (>= 2)
Version1.0.0

View on Bioconductor

Files in this package

GeneGeneInteR/DESCRIPTION
GeneGeneInteR/NAMESPACE
GeneGeneInteR/R
GeneGeneInteR/R/CCA.R GeneGeneInteR/R/CLD.R GeneGeneInteR/R/GATES.R GeneGeneInteR/R/GBIGM.R GeneGeneInteR/R/GGI.R GeneGeneInteR/R/GGItest.R GeneGeneInteR/R/KCCA.R GeneGeneInteR/R/PCA.R GeneGeneInteR/R/PLSPM.R GeneGeneInteR/R/SSIBase.R GeneGeneInteR/R/Scour.R GeneGeneInteR/R/importFile.R GeneGeneInteR/R/imputeSnpMatrix.R GeneGeneInteR/R/minP.R GeneGeneInteR/R/plot.GGInetwork.R GeneGeneInteR/R/print.GGItest.R GeneGeneInteR/R/selectSnps.R GeneGeneInteR/R/summary.GGInetwork.R GeneGeneInteR/R/summary.GGItest.R GeneGeneInteR/R/tProd.R GeneGeneInteR/R/tTS.R
GeneGeneInteR/README.md
GeneGeneInteR/build
GeneGeneInteR/build/vignette.rds
GeneGeneInteR/data
GeneGeneInteR/data/data.SNP.rda
GeneGeneInteR/data/gene.pair.rda
GeneGeneInteR/inst
GeneGeneInteR/inst/NEWS
GeneGeneInteR/inst/doc
GeneGeneInteR/inst/doc/GenePair.R
GeneGeneInteR/inst/doc/GenePair.Rnw
GeneGeneInteR/inst/doc/GenePair.pdf
GeneGeneInteR/inst/doc/VignetteGeneGeneInteR_Introduction.R
GeneGeneInteR/inst/doc/VignetteGeneGeneInteR_Introduction.Rnw
GeneGeneInteR/inst/doc/VignetteGeneGeneInteR_Introduction.pdf
GeneGeneInteR/inst/extdata
GeneGeneInteR/inst/extdata/GGIRes.Rdata
GeneGeneInteR/inst/extdata/dataImported.Rdata
GeneGeneInteR/inst/extdata/dataImputed.Rdata
GeneGeneInteR/inst/extdata/dataScour.Rdata
GeneGeneInteR/inst/extdata/example.info
GeneGeneInteR/inst/extdata/example.ped
GeneGeneInteR/inst/extdata/example.txt
GeneGeneInteR/inst/extdata/response.txt
GeneGeneInteR/man
GeneGeneInteR/man/CCA.test.Rd GeneGeneInteR/man/CLD.test.Rd GeneGeneInteR/man/GBIGM.test.Rd GeneGeneInteR/man/GGI.Rd GeneGeneInteR/man/KCCA.test.Rd GeneGeneInteR/man/PCA.test.Rd GeneGeneInteR/man/PLSPM.test.Rd GeneGeneInteR/man/data.SNP.Rd GeneGeneInteR/man/gates.test.Rd GeneGeneInteR/man/gene.pair.Rd GeneGeneInteR/man/importFile.Rd GeneGeneInteR/man/imputeSnpMatrix.Rd GeneGeneInteR/man/minP.test.Rd GeneGeneInteR/man/plot.GGInetwork.Rd GeneGeneInteR/man/print.GGItest.Rd GeneGeneInteR/man/selectSnps.Rd GeneGeneInteR/man/snpMatrixScour.Rd GeneGeneInteR/man/summary.GGInetwork.Rd GeneGeneInteR/man/summary.GGItest.Rd GeneGeneInteR/man/tProd.test.Rd GeneGeneInteR/man/tTS.test.Rd
GeneGeneInteR/vignettes
GeneGeneInteR/vignettes/Biblio.bib
GeneGeneInteR/vignettes/GGIPlot1.jpg
GeneGeneInteR/vignettes/GGIPlot2.jpg
GeneGeneInteR/vignettes/GGIPlot3.jpg
GeneGeneInteR/vignettes/GGIPlot4.jpg
GeneGeneInteR/vignettes/GenePair.Rnw
GeneGeneInteR/vignettes/VignetteGeneGeneInteR_Introduction.Rnw
GeneGeneInteR/vignettes/network.jpg
GeneGeneInteR/vignettes/networkCust.jpg
GeneGeneInteR/vignettes/networkD.jpg

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.