data.SNP: Multiple genes dataset
In GeneGeneInteR: Tools for Testing Gene-Gene Interaction at the Gene Level
Description
Usage
Format
Value
Source
Description
A case-control dataset containing the genotypes of 312 SNPs from 17 genes in a total of 429 patients (266 individuals affected by Rheumatoid Arthritis and 163 Health controls)
Usage
1
Format
A list with 3 objects:
- snpX
SnpMatrix
object with 312 SNPs and 429 individuals.
- genes.info
a data frame where
each SNP is described by its rs ID, its position and the gene it belongs
to.
- Y
Factor vector of length 429 with 2 levels ("Health Control or
"Rheumatoid"). Y correspond to the case-control status response variable.
Value
A dataset containing the genotypes of 312 SNPs from 17 genes in a total of 429 patients.
Source
All three objects were taken from NCBI web site and are part of the
GSE39428
series
Chang X., et al. Investigating a pathogenic role for TXNDC5 in tumors. Int. J. Oncol., 43(6): 1871-84, 2013.
GeneGeneInteR documentation built on Nov. 8, 2020, 6:28 p.m.
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Description Usage Format Value Source
Description
A case-control dataset containing the genotypes of 312 SNPs from 17 genes in a total of 429 patients (266 individuals affected by Rheumatoid Arthritis and 163 Health controls)
Usage
1 |
Format
A list with 3 objects:
- snpX
SnpMatrix object with 312 SNPs and 429 individuals.
- genes.info
a data frame where each SNP is described by its rs ID, its position and the gene it belongs to.
- Y
Factor vector of length 429 with 2 levels ("Health Control or "Rheumatoid").
Ycorrespond to the case-control status response variable.
Value
A dataset containing the genotypes of 312 SNPs from 17 genes in a total of 429 patients.
Source
All three objects were taken from NCBI web site and are part of the
GSE39428
series
Chang X., et al. Investigating a pathogenic role for TXNDC5 in tumors. Int. J. Oncol., 43(6): 1871-84, 2013.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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