gene.pair: A case-control dataset with two genes

In GeneGeneInteR: Tools for Testing Gene-Gene Interaction at the Gene Level

Description

A case-control dataset containing the genotypes of 8 SNPs within GC gene (object G1) and 4 SNPs within PADI2 gene (object G2). The dataset includes 247 individuals affected by Rheumatoid Arthritis (RA) and 202 individuals not affected by RA.

Usage

data(gene.pair)

Format

A list with 3 objects:

Y

A factor of disease status with two levels: HealthControl or RheumatoidArthritis.

G1

A SnpMatrix object with 8 SNPs.

G2

A SnpMatrix object with 4 SNPs.

Value

A dataset containing the genotypes of 8 SNPs within GC gene (object G1) and 4 SNPs within PADI2 gene (object G2).

Source

All three objects were taken from NCBI web site and are part of the GSE39428 series Chang X., et al. Investigating a pathogenic role for TXNDC5 in tumors. Int. J. Oncol., 43(6): 1871-84, 2013.

GeneGeneInteR documentation built on Nov. 8, 2020, 6:28 p.m.