Man pages for GeneGeneInteR
Tools for Testing Gene-Gene Interaction at the Gene Level

CCA.testCCA (Canonical-Correlation Analysis) based GGI analysis.
CLD.testCLD (Composite Linkage Desequilibrium) based GGI analysis.
data.SNPMultiple genes dataset
gates.testGene-based Gene-Gene Interaction analysis by combining...
GBIGM.testGBIGM (Gene-based information gain method) for GGI analysis.
gene.pairA case-control dataset with two genes
GGIGene-Gene Interaction Analysis of a set of genes
importFileImports SNPs information from pedfile, PLINK, VCF (4.0) file,...
imputeSnpMatrixMissing values handling for SnpMatrix object
KCCA.testKCCA (Kernel Canonical-Correlation Analysis) based GGI...
minP.testGene-based Gene-Gene Interaction analysis by combining...
PCA.testPCA-based Gene-Gene Interaction analysis.
plot.GGInetworkPlot a Gene-Gene Interaction Study with an heatmap-like...
PLSPM.testPLSPM (Partial Least Squares Path Modelling Analysis) based...
print.GGItestPrinting objects of class '"GGItest"'
selectSnpsSelects SNPs in snpMatrix and associated info data.frame,...
snpMatrixScourSNP filtering based on Minor Allele Frequency, Hardy-Weinberg...
summary.GGInetworkPrinting summaries class '"GGInetwork"' objects
summary.GGItestPrinting summaries class '"GGItest"' objects
tProd.testGene-based Gene-Gene Interaction analysis by combining...
tTS.testGene-based Gene-Gene Interaction analysis by combining...
GeneGeneInteR documentation built on May 2, 2018, 4:26 a.m.