TiphaineCMartin/coMET
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns

Package index
Search the TiphaineCMartin/coMET package
Vignettes
Functions
285
Source code
14
Man pages
93
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TiphaineCMartin/coMET: coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
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API

API for TiphaineCMartin/coMET
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns

Global functions
BindingMotifAll Man page
BindingMotifMultiple Man page
BindingMotifSingle Man page
COSMIC_UCSC Man page Source code
ChIPTF_ENCODE Man page Source code
ClinVarCnv_UCSC Man page Source code
ClinVarMain_UCSC Man page Source code
CoreillCNV_UCSC Man page Source code
DNAse_UCSC Man page Source code
DNaseI_FANTOM Man page Source code
DNaseI_RoadMap Man page Source code
DNaseI_RoadMapSingle Man page
DupTrack Man page
GAD_UCSC Man page Source code
GWAScatalog_UCSC Man page Source code
GeneReviews_UCSC Man page Source code
HiCdata2matrix Man page Source code
HistoneAll_UCSC Man page Source code
HistoneOne_UCSC Man page Source code
ISCA_UCSC Man page Source code
OtherRegulatoryRegionsTrackAll Man page
OtherRegulatoryRegionsTrackSingle Man page
PancreasIG Man page
PancreasIGtrack Man page
PancreasimprintedIG Man page
PancreasimprintedIGtrack Man page
RegulatoryEvidenceBiomartTrackAll Man page
RegulatoryEvidenceBiomartTrackMultiple Man page
RegulatoryEvidenceBiomartTrackSingle Man page
RegulatoryFeaturesBiomartTrackAll Man page
RegulatoryFeaturesBiomartTrackMultiple Man page
RegulatoryFeaturesBiomartTrackSingle Man page
RegulatorySegmentsBiomartTrackAll Man page
RegulatorySegmentsBiomartTrackMultiple Man page
RegulatorySegmentsBiomartTrackSingle Man page
StomachIG Man page
StomachIGtrack Man page
TFBS_FANTOM Man page Source code
allIG Man page
allIGtrack Man page
allimprintedIG Man page
allimprintedIGtrack Man page
bindMotifsBiomartTrackAll Man page
bindMotifsBiomartTrackDouble Man page
bindMotifsBiomartTrackMultiple Man page
bindMotifsBiomartTrackSingle Man page
bindingMotifsBiomart_ENSEMBL Man page
check.configVar Man page Source code
check.configVar.cometlist Source code
check.configVarcometlist Man page
check.format.mydata Man page Source code
chipTFtrack Man page
chrUCSC2ENSEMBL Man page Source code
chromHMM_RoadMap Man page Source code
chromHMM_RoadMapAll Man page
chromHMM_RoadMapAllE063 Man page
chromHMM_RoadMapMultiple Man page
chromHMM_RoadMapSingle Man page
chromatinHMMAll_UCSC Man page Source code
chromatinHMMOne_UCSC Man page Source code
chromatinHMMRoadMapAll Man page
chromatinHMMRoadMapMultiple Man page
chromatinHMMRoadMapSingle Man page
chromhmmNoPattern Man page
chromhmmPattern Man page
chromhmmtrackone Man page
clinCNV Man page
clinVariant Man page
coMET Man page
coMET-package Man page
comet Man page Source code
comet.list Man page Source code
comet.web Man page Source code
compute.cormatrix Man page Source code
coreilVariant Man page
cosmicVariant Man page
cpgIslands_UCSC Man page Source code
cpgIslandtrack Man page
cpgIstrack Man page
cpgPvalue Man page Source code
create.color.bar Man page Source code
create.color.list Man page Source code
create.color.list.large Man page Source code
create.symbol.list Man page Source code
create.symbol.list.large Man page Source code
create.tracks.user Man page Source code
create.tracks.web Man page Source code
createList.trackUser Man page Source code
dgfootprints_RoadMap Man page Source code
dgfootprints_RoadMapSingle Man page
dnasetrack Man page
draw.legend Man page Source code
draw.name.genes.web Man page Source code
draw.name.tracks.web Man page Source code
draw.plot.annotation Man page Source code
draw.plot.axis.data Man page Source code
draw.plot.comet Man page Source code
draw.plot.comet.nopval Man page Source code
draw.plot.comet.web Man page Source code
draw.plot.cormatrix.plot Man page Source code
draw.plot.grid.mydata Man page Source code
draw.plot.grid.mydata.large Man page Source code
draw.plot.grid.mydata.names Man page Source code
draw.plot.grid.setup Man page Source code
draw.plot.linesconnection Man page Source code
draw.plot.mydata.ggbio Man page Source code
dyaRM Man page
dyaRMtrack Man page
eGTexTrackSNP Man page
eGTexTrackall Man page
eQTL Man page Source code
eQTLTrackAll Man page
eQTLTrackMultiple Man page
eQTLTrackSingle Man page
eQTL_GTEx Man page Source code
enhFANTOMtrack Man page
enhRM Man page
enhRMtrack Man page
fix.values Man page Source code
fix.values.generic Man page Source code
fix.values.large Man page Source code
gadtrack Man page
gcContent_UCSC Man page Source code
gctrack Man page
geneExpression_GTEx Source code
geneNameEnsembl Man page
geneRtrack Man page
genesName_ENSEMBL Man page Source code
genesUcsctrack Man page
genes_ENSEMBL Man page Source code
genetrack Man page
grtrack Man page
grtrack4eGTex Man page
gwastrack Man page
histonalltrack Man page
histoneonetrack Man page
imprintedGenesGTEx Man page
imprintedGenes_GTEx Man page Source code
interestGenes_ENSEMBL Man page Source code
interestTranscript_ENSEMBL Man page Source code
interestgenesENSMBLtrack Man page
interesttransENSMBLtrack Man page
iscatrack Man page
knownGenes_UCSC Man page Source code
matrix_HiC_Rao Man page
metQTL Man page Source code
metQTLTrackAll Man page
metQTLTrackMultiple Man page
metQTLTrackSingle Man page
miRNATargetRegionsBiomartTrack Man page
miRNATargetRegionsBiomart_ENSEMBL Man page
otherRegulatoryRegionsBiomart_ENSEMBL Man page
otherRegulatoryRegionsTrackAll Man page
otherRegulatoryRegionsTrackSingle Man page
printPlot.comet Man page Source code
printPlot.comet.nopval Man page Source code
printPlot.comet.web Man page Source code
promRMtrack Man page
promRMtrackE063 Man page
psiGTex Man page
psiGTexTrackSNP Man page
psiGTexTrackall Man page
psiQTL_GTEx Man page Source code
read.config Man page Source code
read.file.cormatrix Man page Source code
read.file.mydata Man page Source code
read.file.mydata.large Man page Source code
refGenes_UCSC Man page Source code
regulationBiomart_ENSEMBL Man page Source code
regulationENSEMBLtrack Man page
regulatoryEvidenceBiomartTrackAll Man page
regulatoryEvidenceBiomartTrackMultiple Man page
regulatoryEvidenceBiomartTrackSingle Man page
regulatoryEvidenceBiomart_ENSEMBL Man page
regulatoryFeaturesBiomartTrackAll Man page
regulatoryFeaturesBiomartTrackMultiple Man page
regulatoryFeaturesBiomartTrackSingle Man page
regulatoryFeaturesBiomart_ENSEMBL Man page
regulatorySegmentsBiomartTrackAll Man page
regulatorySegmentsBiomartTrackMultiple Man page
regulatorySegmentsBiomartTrackSingle Man page
regulatorySegmentsBiomart_ENSEMBL Man page
repeatMaskerTrack Man page
repeatMasker_UCSC Man page Source code
retrieve.data Man page Source code
retrieve.data.cometlist Source code
rmtrack Man page
segmentalDups_UCSC Man page Source code
set.image.parameters Man page Source code
snpBiomart_ENSEMBL Man page Source code
snpLocations_UCSC Man page Source code
snpUCSCtrack Man page
snptrack Man page
structureBiomart_ENSEMBL Man page Source code
strutrack Man page
tfbsFANTOMtrack Man page
transENSMBLtrack Man page
transcript_ENSEMBL Man page Source code
write.comet.list Source code
xenogenestrack Man page
xenorefGenes_UCSC Man page Source code
TiphaineCMartin/coMET documentation built on April 27, 2022, 6:45 a.m.

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