SISPA: SISPA: Method for Sample Integrated Set Profile Analysis
Version 1.6.0

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

Browse man pages Browse package API and functions Browse package files

AuthorBhakti Dwivedi and Jeanne Kowalski
Bioconductor views GeneSetEnrichment GenomeWideAssociation
Date of publicationNone
MaintainerBhakti Dwivedi <bhakti.dwivedi@emory.edu>
LicenseGPL-2
Version1.6.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SISPA")

Man pages

callGSVA: GSVA enrichment analysis
callZSCORE: Row ZSCORES
cptSamples: Sample profile identifier analysis
expression_data: An example of RNAseq derived gene expression data
filterVars: A filter function for the data
freqplot: A plotting function for SISPA sample identifiers
SISPA: SISPA
sortData: Sorts the data by a column
variant_data: An example of RNAseq derived gene variant change data
waterfallplot: A plotting function for SISPA sample identifiers

Functions

SISPA Man page Source code
callGSVA Man page Source code
callZSCORE Man page Source code
cptSamples Man page Source code
expression_data Man page
filterVars Man page Source code
freqplot Man page Source code
sortData Man page Source code
variant_data Man page
waterfallplot Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/SISPA.R
R/callGSVA.R
R/callZSCORE.R
R/cptSamples.R
R/expression_data.R
R/filterVars.R
R/freqplot.R
R/sortData.R
R/variant_data.R
R/waterfallplot.R
README.txt
data
data/expression_data.txt
data/variant_data.txt
man
man/SISPA.Rd
man/callGSVA.Rd
man/callZSCORE.Rd
man/cptSamples.Rd
man/expression_data.Rd
man/filterVars.Rd
man/freqplot.Rd
man/sortData.Rd
man/variant_data.Rd
man/waterfallplot.Rd
vignettes
vignettes/SISPA.Rmd
vignettes/SISPA.md
vignettes/SISPA_data.Rda
vignettes/SISPA_files
vignettes/SISPA_files/figure-html
vignettes/SISPA_files/figure-html/unnamed-chunk-2-1.png
vignettes/SISPA_files/figure-html/unnamed-chunk-3-1.png
vignettes/SISPA_files/figure-html/unnamed-chunk-4-1.png
vignettes/SISPA_files/figure-html/unnamed-chunk-5-1.png
vignettes/SISPA_files/figure-html/unnamed-chunk-6-1.png
vignettes/SISPA_files/figure-html/unnamed-chunk-7-1.png
vignettes/figure
vignettes/sispa_overview.png
SISPA documentation built on May 20, 2017, 11 p.m.