CNVRanger: Summarization and expression/phenotype association of CNV ranges

The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.

Package details

AuthorLudwig Geistlinger [aut, cre], Vinicius Henrique da Silva [aut], Marcel Ramos [ctb], Levi Waldron [ctb]
Bioconductor views CopyNumberVariation DifferentialExpression GeneExpression GenomeWideAssociation GenomicVariation Microarray RNASeq SNP
MaintainerLudwig Geistlinger <ludwig_geistlinger@hms.harvard.edu>
LicenseArtistic-2.0
Version1.6.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNVRanger")

Try the CNVRanger package in your browser

Any scripts or data that you put into this service are public.

CNVRanger documentation built on Dec. 12, 2020, 2 a.m.