API for CNVRanger
Summarization and expression/phenotype association of CNV ranges

Global functions
.approxP Source code
.assoPrCNV Source code
.checkConvertCNVs Source code
.classifyRegs Source code
.clusterCalls Source code
.createFolderTree Source code
.densityPopRanges Source code
.estimateRecurrence Source code
.extendRegions Source code
.formatResult Source code
.freadImport Source code
.getFreq Source code
.getMergeIndex Source code
.getPLINK Source code
.getROHits Source code
.getStates Source code
.getType Source code
.largest Source code
.loadPhen Source code
.loadToMergeCNV Source code
.permP Source code
.preprocRnaSeq Source code
.prodCNVseg Source code
.prodGvar Source code
.prodGvarLRR Source code
.prodPLINKfam Source code
.prodPLINKgvar Source code
.prodPLINKmap Source code
.prodProbes Source code
.pruneMultiAssign Source code
.qqunifPlot Source code
.recodeCNVgenotype Source code
.replaceSNPtoCNV Source code
.roPopRanges Source code
.runPLINK Source code
.scoreRegion Source code
.snpgdsGetGenoCNV Source code
.testCnvExpr Source code
.weightedmean Source code
.window2integer Source code
.writeProbesCNV Source code
cnvEQTL Man page Source code
cnvGWAS Man page Source code
estlambda Source code
generateGDS Man page Source code
importLrrBaf Man page Source code
plotEQTL Man page Source code
plotManhattan Man page Source code
plotRecurrentRegions Man page Source code
populationRanges Man page Source code
setupCnvGWAS Man page Source code
testit Source code
CNVRanger documentation built on July 19, 2019, 2 a.m.