geneAttribution: Identification of candidate genes associated with genetic variation
Version 1.2.0

Identification of the most likely gene or genes through which variation at a given genomic locus in the human genome acts. The most basic functionality assumes that the closer gene is to the input locus, the more likely the gene is to be causative. Additionally, any empirical data that links genomic regions to genes (e.g. eQTL or genome conformation data) can be used if it is supplied in the UCSC .BED file format.

AuthorArthur Wuster
Bioconductor views GenePrediction GenomeWideAssociation GenomicVariation SNP VariantAnnotation
Date of publicationNone
MaintainerArthur Wuster <wustera@gene.com>
LicenseArtistic-2.0
Version1.2.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("geneAttribution")

Getting started

README.md
geneAttribution: Identification of Candidate Genes Associated with Noncoding Genetic Variation

Popular man pages

geneAttribution: geneAttribution: Identification of candidate genes associated...
geneModels: Load gene models
loadBed: Load UCSC *.BED files containing empirical data
normP: Normalize likelihoods and return probabilities
See all...

All man pages Function index File listing

Man pages

geneAttribution: geneAttribution: Identification of candidate genes associated...
geneModels: Load gene models
loadBed: Load UCSC *.BED files containing empirical data
normP: Normalize likelihoods and return probabilities

Functions

geneAttribution Man page Source code
geneAttribution-package Man page
geneModels Man page Source code
loadBed Man page Source code
normP Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/geneAttribution.R
README.md
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/geneAttribution.Rmd
inst/doc/geneAttribution.html
inst/extdata
inst/extdata/eqtlHaplotypeBlocks.b38.bed
inst/extdata/hiCRegions.b38.bed
man
man/geneAttribution.Rd
man/geneModels.Rd
man/loadBed.Rd
man/normP.Rd
tests
tests/testthat
tests/testthat.R
tests/testthat/testGeneAttribution.R
vignettes
vignettes/geneAttribution.Rmd
geneAttribution documentation built on May 20, 2017, 9:17 p.m.