gcatest: Genotype Conditional Association TEST
Version 1.6.1

GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.

Browse man pages Browse package API and functions Browse package files

AuthorWei Hao, Minsun Song, John D. Storey
Bioconductor views DimensionReduction GenomeWideAssociation PrincipalComponent SNP
Date of publicationNone
MaintainerWei Hao <whao@princeton.edu>, John D. Storey <jstorey@princeton.edu>
LicenseGPL-3
Version1.6.1
URL https://github.com/StoreyLab/gcatest
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("gcatest")

Man pages

gcat: Genotype Conditional Association TEST
sim_geno: Simulated data from PSD model
sim_trait: Simulated data from PSD model

Functions

assoc_snp_na Source code
gcat Man page Source code
gcat.stat Man page Source code
gcatest Man page
sim_geno Man page
sim_trait Man page

Files

DESCRIPTION
NAMESPACE
R
R/data.R
R/gcat.R
build
build/vignette.rds
data
data/datalist
data/sim_geno.rda
data/sim_trait.rda
inst
inst/doc
inst/doc/gcatest.R
inst/doc/gcatest.Rnw
inst/doc/gcatest.pdf
man
man/gcat.Rd
man/sim_geno.Rd
man/sim_trait.Rd
src
src/Makevars
src/assoc.c
src/gcatest-init.c
vignettes
vignettes/gcatest.Rnw
vignettes/gcatest.bib
gcatest documentation built on May 20, 2017, 9:14 p.m.