globalSeq: Testing for association between RNA-Seq and high-dimensional data

The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("globalSeq")
AuthorArmin Rauschenberger [aut, cre]
Bioconductor views DifferentialExpression DimensionReduction ExomeSeq ExonArray GeneExpression GenomeWideAssociation MultipleComparison RNASeq Regression Sequencing Transcriptomics WholeGenome miRNA
Date of publicationNone
MaintainerArmin Rauschenberger <a.rauschenberger@vumc.nl>
LicenseGPL-3
Version1.4.0
https://github.com/rauschenberger/globalSeq

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
NEWS.md
R
R/internal_functions.R R/pkgname.R R/user_functions.R
README.md
build
build/vignette.rds
data
data/toydata.rda
inst
inst/CITATION
inst/doc
inst/doc/article.Rmd
inst/doc/article.html
inst/doc/globalSeq.R
inst/doc/globalSeq.Rnw
inst/doc/globalSeq.pdf
inst/doc/vignette.Rmd
inst/doc/vignette.html
man
man/cursus.Rd man/globalSeq-package.Rd man/intern.chromo.Rd man/intern.crude.Rd man/intern.estim.Rd man/intern.matrix.Rd man/intern.permu.Rd man/intern.plot.Rd man/intern.sam.Rd man/intern.score.Rd man/intern.select.Rd man/internal.Rd man/omnibus.Rd man/proprius.Rd man/toydata.Rd
tests
tests/testthat
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test.R
vignettes
vignettes/article.Rmd
vignettes/globalSeq.Rnw
vignettes/globalSeq.bib
vignettes/vignette.Rmd

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