Rhisat2: R Wrapper for HISAT2 Aligner

An R interface to the HISAT2 spliced short-read aligner by Kim et al. (2015). The package contains wrapper functions to create a genome index and to perform the read alignment to the generated index.

Package details

AuthorCharlotte Soneson [aut, cre] (<https://orcid.org/0000-0003-3833-2169>)
Bioconductor views Alignment Sequencing SplicedAlignment
MaintainerCharlotte Soneson <charlottesoneson@gmail.com>
URL https://github.com/fmicompbio/Rhisat2
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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Rhisat2 documentation built on Nov. 8, 2020, 5:49 p.m.