Rhisat2-package: R hisat2 wrapper
In Rhisat2: R Wrapper for HISAT2 Aligner
Description
Author(s)
References
See Also
Description
This package provides an R wrapper around the HISAT2 short read aligner. The
package is used by the QuasR Bioconductor package. We recommend to use QuasR
instead of calling Rhisat2 directly, since it covers the whole analysis
workflow of typical high-throughput sequencing experiments.
Author(s)
Charlotte Soneson, based partly on code from Florian Hahne
References
Kim D, Langmead B and Salzberg SL. HISAT: a fast spliced aligner with low
memory requirements. Nature Methods 12:357-360 (2015).
See Also
hisat2, hisat2_build, hisat2_build_usage, hisat2_usage
Rhisat2 documentation built on Nov. 8, 2020, 5:49 p.m.
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Description Author(s) References See Also
Description
This package provides an R wrapper around the HISAT2 short read aligner. The package is used by the QuasR Bioconductor package. We recommend to use QuasR instead of calling Rhisat2 directly, since it covers the whole analysis workflow of typical high-throughput sequencing experiments.
Author(s)
Charlotte Soneson, based partly on code from Florian Hahne
References
Kim D, Langmead B and Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nature Methods 12:357-360 (2015).
See Also
hisat2, hisat2_build, hisat2_build_usage, hisat2_usage
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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