ETHZ-INS/scanMiR: scanMiR

A set of tools for working with miRNA affinity models (KdModels), efficiently scanning for miRNA binding sites, and predicting target repression. It supports scanning using miRNA seeds, full miRNA sequences (enabling 3' alignment) and KdModels, and includes the prediction of slicing and TDMD sites. Finally, it includes utility and plotting functions (e.g. for the visual representation of miRNA-target alignment).

Getting started

Package details

Bioconductor views Alignment SequenceMatching miRNA
Maintainer
LicenseGPL-3
Version1.3.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ETHZ-INS/scanMiR")
ETHZ-INS/scanMiR documentation built on May 3, 2022, 10:11 a.m.