getSeed8mers: getSeed8mers
In ETHZ-INS/scanMiR: scanMiR
getSeed8mers R Documentation
getSeed8mers
Description
Generates all possible 8mers with 4 consecutive and positioned matches to a
given seed.
Usage
getSeed8mers(seed, addNs = FALSE)
Arguments
seed
The miRNA seed (target DNA sequence), a character vector of
length 8 (if of length 7, a "A" will be added on the right)
addNs
Logical; whether to include 8mers with one flanking N
Value
A vector of 1024 8mers.
Examples
head(getSeed8mers("ACACTCCA"))
ETHZ-INS/scanMiR documentation built on April 16, 2024, noon
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| getSeed8mers | R Documentation |
getSeed8mers
Description
Generates all possible 8mers with 4 consecutive and positioned matches to a given seed.
Usage
getSeed8mers(seed, addNs = FALSE)
Arguments
seed |
The miRNA seed (target DNA sequence), a character vector of length 8 (if of length 7, a "A" will be added on the right) |
addNs |
Logical; whether to include 8mers with one flanking N |
Value
A vector of 1024 8mers.
Examples
head(getSeed8mers("ACACTCCA"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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