getMatchTypes: getMatchTypes
In ETHZ-INS/scanMiR: scanMiR
getMatchTypes R Documentation
getMatchTypes
Description
Given a seed and a set of sequences matching it, returns the type of match.
Usage
getMatchTypes(x, seed, checkWobble = TRUE)
Arguments
x
A character vector of short sequences.
seed
A 7 or 8 nucleotides string indicating the seed (5' to 3'
sequence of the target RNA). If of length 7, an "A" will be appended.
checkWobble
Whether to flag wobbled sites
Value
A factor of match types.
Examples
x <- c("AACACTCCAG","GACACTCCGC","GTACTCCAT","ACGTACGTAC")
getMatchTypes(x, seed="ACACTCCA")
ETHZ-INS/scanMiR documentation built on April 16, 2024, noon
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| getMatchTypes | R Documentation |
getMatchTypes
Description
Given a seed and a set of sequences matching it, returns the type of match.
Usage
getMatchTypes(x, seed, checkWobble = TRUE)
Arguments
x |
A character vector of short sequences. |
seed |
A 7 or 8 nucleotides string indicating the seed (5' to 3' sequence of the target RNA). If of length 7, an "A" will be appended. |
checkWobble |
Whether to flag wobbled sites |
Value
A factor of match types.
Examples
x <- c("AACACTCCAG","GACACTCCGC","GTACTCCAT","ACGTACGTAC")
getMatchTypes(x, seed="ACACTCCA")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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