assignKdType: assignKdType

In ETHZ-INS/scanMiR: scanMiR

assignKdType

Description

Assigns a log_kd and match type to a set of matched sequences.

Usage

assignKdType(x, mod, mer8 = NULL)

Arguments

x	A vector of matched sequences, each of 12 nucleotides
mod	An object of class 'KdModel'
mer8	The optional set of 8mers included in the model (for internal use; can be reconstructed from the model).

Value

A data.frame with one row for each element of 'x', and the columns 'type' and 'log_kd'. To save space, the reported log_kd is multiplied by 1000, rounded and saved as an integer.

Examples

data(SampleKdModel)
assignKdType(c("CTAGCATTAAGT","ACGTACGTACGT"), SampleKdModel)

ETHZ-INS/scanMiR documentation built on April 16, 2024, noon