assignKdType: assignKdType
In ETHZ-INS/scanMiR: scanMiR
assignKdType R Documentation
assignKdType
Description
Assigns a log_kd and match type to a set of matched sequences.
Usage
assignKdType(x, mod, mer8 = NULL)
Arguments
x
A vector of matched sequences, each of 12 nucleotides
mod
An object of class 'KdModel'
mer8
The optional set of 8mers included in the model (for internal
use; can be reconstructed from the model).
Value
A data.frame with one row for each element of 'x', and the columns
'type' and 'log_kd'. To save space, the reported log_kd is multiplied by
1000, rounded and saved as an integer.
Examples
data(SampleKdModel)
assignKdType(c("CTAGCATTAAGT","ACGTACGTACGT"), SampleKdModel)
ETHZ-INS/scanMiR documentation built on July 17, 2024, 6:18 a.m.
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| assignKdType | R Documentation |
assignKdType
Description
Assigns a log_kd and match type to a set of matched sequences.
Usage
assignKdType(x, mod, mer8 = NULL)
Arguments
x |
A vector of matched sequences, each of 12 nucleotides |
mod |
An object of class 'KdModel' |
mer8 |
The optional set of 8mers included in the model (for internal use; can be reconstructed from the model). |
Value
A data.frame with one row for each element of 'x', and the columns 'type' and 'log_kd'. To save space, the reported log_kd is multiplied by 1000, rounded and saved as an integer.
Examples
data(SampleKdModel)
assignKdType(c("CTAGCATTAAGT","ACGTACGTACGT"), SampleKdModel)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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