jipingw/RiboDiPA: Differential pattern analysis for Ribo-seq data

This package performs differential pattern analysis for Ribo-seq data. It identifies genes with significantly different patterns in the ribosome footprint between two conditions. RiboDiPA contains five major components including bam file processing, P-site mapping, data binning, differential pattern analysis and footprint visualization.

Getting started

Package details

Bioconductor views Alignment Coverage DataImport DifferentialExpression GeneExpression GeneRegulation ImmunoOncology Normalization QualityControl RNASeq RiboSeq Sequencing Software
Maintainer
LicenseLGPL (>= 3)
Version0.99.19
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("jipingw/RiboDiPA")
jipingw/RiboDiPA documentation built on Dec. 21, 2020, 8:20 a.m.