jipingw/RiboDiPA: Differential pattern analysis for Ribo-seq data

This package performs differential pattern analysis for Ribo-seq data. It identifies genes with significantly different patterns in the ribosome footprint between two conditions. RiboDiPA contains five major components including bam file processing, P-site mapping, data binning, differential pattern analysis and footprint visualization.

Getting started

Package details

AuthorKeren Li [aut], Matt Hope [aut], Xiaozhong Wang [aut], Ji-Ping Wang [aut, cre]
Bioconductor views Alignment Coverage DataImport DifferentialExpression GeneExpression GeneRegulation ImmunoOncology Normalization QualityControl RNASeq RiboSeq Sequencing Software
MaintainerJi-Ping Wang <jzwang@northwestern.edu>
LicenseLGPL (>= 3)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
jipingw/RiboDiPA documentation built on June 25, 2022, 4:47 p.m.