result.pst: An example of differential pattern analysis result

In jipingw/RiboDiPA: Differential pattern analysis for Ribo-seq data

An example of differential pattern analysis result

Description

An example output generated by the differential pattern analysis function diffPatternTest, including binned data, differential pattern results, etc.

Usage

data("result.pst")

Format

A list of size 5

bin

A list object of codon/bin-level test results. Each element of the list is the result from a gene, containing columns: pvalue, log2FoldChange, and the adjusted p-value by method "gtxr"

gene

Gene-level differential pattern results, including T-value, p-value, and q-value

classlabel

See diffPatternTest

data

The input data for differential pattern analysis in the format of a list of named matrices. In each element of the list, rows correspond to replicates,columns correspond to bins.

method

See diffPatternTest.

small

Names of genes without sufficient reads, not reported in bin and gene.

Source

The data was adapted from Kasari et al 2019.

Examples

data(result.pst)
plotTrack(data = data.psite, genes.list = c("YDR050C", "YDR064W"), 
    replicates = NULL, exons = FALSE)

jipingw/RiboDiPA documentation built on Dec. 10, 2024, 8:46 p.m.