An example output generated by the differential pattern analysis
diffPatternTest, including binned data, differential
pattern results, etc.
A list of size 5
A list object of codon/bin-level test results. Each element
of the list is the result from a gene, containing columns:
log2FoldChange, and the adjusted p-value by method "gtxr"
Gene-level differential pattern results, including T-value, p-value, and q-value
The input data for differential pattern analysis in the format of a list of named matrices. In each element of the list, rows correspond to replicates,columns correspond to bins.
Names of genes without sufficient reads, not reported in
The data was adapted from Kasari et al 2019.
data(result.pst) plotTrack(data = data.psite, genes.list = c("YDR050C", "YDR064W"), replicates = NULL, exons = FALSE)
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