plotTrack: Plotting ribosome footprint data at the mapped P-site level

In jipingw/RiboDiPA: Differential pattern analysis for Ribo-seq data

Plotting ribosome footprint data at the mapped P-site level

Description

This function visualizes the ribosome footprint in the form of P-site frequency at the per nucleotide level along the total transcript. Plotting is implemented with the ggplot2 package.

Usage

plotTrack(data, genes.list, replicates = NULL,exons = FALSE)

Arguments

data	Data object from psiteMapping function or wrapper function RiboDiPA.
genes.list	A list of genes for visualization.
replicates	Names of the replicates for which the footprint to visualize. The default is for all.
exons	If value is TRUE, Ribo-seq footprints per exon of specified genes are also output.

Value

Visualizes the Ribo-seq per nucleotide footprint on merged exons of the genes and replicates specified. If exons is TRUE, Ribo-seq footprint per exon of specified genes is also output.

Examples

data(data.psite)
plotTrack(data = data.psite, genes.list = c("YDR050C", "YDR064W"), 
    replicates = NULL, exons = FALSE)

jipingw/RiboDiPA documentation built on Dec. 10, 2024, 8:46 p.m.