data.binned | R Documentation |
A example data containing binned ribosome P-site tracks of 4 replicates on 885
genes, two biological replicates each for wild type cells and
New1 mutant cells, respectively. It is the output of the data binning function
dataBinning
on P-site coverage data, and input for diffPatternTest
function for differential pattern analysis.
data("data.binned")
A list of 885 matrices corresponding to 885 genes: in each matrix, rows correspond to replicates, columns correspond to bins. Bin names are set to "start-end" genomic coordinates.
The raw data was adapted from Kasari et al 2019.
data(data.binned) classlabel <- data.frame(condition = c("mutant", "mutant", "wildtype", "wildtype"), comparison = c(2, 2, 1, 1)) rownames(classlabel) <- c("mutant1", "mutant2", "wildtype1", "wildtype2") result.pst <- diffPatternTest(data = data.binned, classlabel = classlabel, method = c('gtxr', 'qvalue'))
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.