result.exon: An example of exon-level differential pattern analysis result

In jipingw/RiboDiPA: Differential pattern analysis for Ribo-seq data

An example of exon-level differential pattern analysis result

Description

An example output generated by the differential pattern analysis function diffPatternTestExon, including counts per exon, exon-level differential pattern results, etc.

Usage

data("result.exon")

Format

A list of 5

bin

A list object of exon-level test results. Each element of the list is the result from a gene, containing columns: pvalue, log2FoldChange, the adjusted p-value by method "gtxr", and other exon genomic information.

gene

Gene-level differential pattern results, including T-value, p-value, and q-value

method

See diffPatternTestExon

exon

Counts per exon, binned from data, for the final differential pattern analysis in the format of a list of named matrices. In each element of the list, rows correspond to replicates, columns correspond to exons.

data

The ribosome P-site coverage tracks in the format of a list of named matrices. In each element of the list, rows correspond to replicates, columns correspond to bps.

classlabel

See diffPatternTestExon

Source

The data was adapted from Kasari et al 2019.

Examples

data(result.exon)
tracks.exon <- exonTrack(data = result.exon, gene = "YDR050C")

jipingw/RiboDiPA documentation built on Dec. 10, 2024, 8:46 p.m.