data.psite: An example of P-site coverage data

In jipingw/RiboDiPA: Differential pattern analysis for Ribo-seq data

An example of P-site coverage data

Description

An example data set containing 4 ribo-seq replicates of 885 genes, two biological replicates each for wild type cells and New1 mutant cells, respectively. It is the output of P-site mapping funcion psiteMapping. It contains the p-site count at each location of the total transcript within each replicate.

Usage

data("data.psite")

Format

A list of size 4

coverage

ribosome P-site coverage tracks

counts

ribosome P-site total count, one count per gene

psite.mapping

P-site mapping offset rule

exons

relative start and end positions of each exon in the total transcript if a given gene, as well as genomic start and end coordinates

Source

Raw data was adapted from Kasari et al 2019.

Examples

data(data.psite)
data.binned <- dataBinning(data = data.psite$coverage, bin.width = 0, 
    zero.omit = FALSE, bin.from.5UTR = TRUE, cores = 2)

jipingw/RiboDiPA documentation built on Dec. 10, 2024, 8:46 p.m.