Bioconductor/Rsamtools: Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Getting started

Package details

AuthorMartin Morgan, Herv\'e Pag\`es, Valerie Obenchain, Nathaniel Hayden
Bioconductor views Alignment Coverage DataImport QualityControl Sequencing
MaintainerBioconductor Package Maintainer <[email protected]>
LicenseArtistic-2.0 | file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Bioconductor/Rsamtools documentation built on Nov. 6, 2019, 4:07 p.m.