Rsamtools-package: 'samtools' aligned sequence utilities interface

In Bioconductor/Rsamtools: Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

'samtools' aligned sequence utilities interface

Description

This package provides facilities for parsing samtools BAM (binary) files representing aligned sequences.

Details

See packageDescription('Rsamtools') for package details. A useful starting point is the scanBam manual page.

Note

This package documents the following classes for purely internal reasons, see help pages in other packages: bzfile, fifo, gzfile, pipe, unz, url.

Author(s)

Author: Martin Morgan

Maintainer: Biocore Team c/o BioC user list <[e-mail]>

References

The current source code for samtools and bcftools is from https://github.com/samtools/samtools. Additional material is at http://samtools.sourceforge.net/.

Examples

packageDescription('Rsamtools')

Bioconductor/Rsamtools documentation built on May 2, 2024, 11:20 p.m.