Guitar: Guitar

The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

AuthorJia Meng
Date of publicationNone
MaintainerJia Meng <jia.meng@xjtlu.edu.cn>
LicenseGPL-2
Version1.12.0

View on Bioconductor

Files

Guitar/DESCRIPTION
Guitar/NAMESPACE
Guitar/R
Guitar/R/BED12toGRangesList.R Guitar/R/GuitarPlot2.R Guitar/R/combinedGuitarPlot.R Guitar/R/getNeighborhood.R Guitar/R/makeGuitarCoordsFromGRangesList.R Guitar/R/makeGuitarCoordsFromTxDb.R Guitar/R/multiplot.R Guitar/R/narrowPeak2GRanges.R
Guitar/README.md
Guitar/build
Guitar/build/vignette.rds
Guitar/inst
Guitar/inst/CITATION
Guitar/inst/NEWS
Guitar/inst/doc
Guitar/inst/doc/Guitar-Overview.R
Guitar/inst/doc/Guitar-Overview.Rnw
Guitar/inst/doc/Guitar-Overview.pdf
Guitar/inst/extdata
Guitar/inst/extdata/866991_part.bam
Guitar/inst/extdata/866992_part.bam
Guitar/inst/extdata/DNAm5C_mm10_10000sites_bismark.cov
Guitar/inst/extdata/H3K4me3_mm10_1000peaks.bed
Guitar/inst/extdata/RNAm5C_mm10_10000sites_bismark.cov
Guitar/inst/extdata/hg19_toy.sqlite
Guitar/inst/extdata/m6A_hg19_1000peaks_macs2.narrowPeak
Guitar/inst/extdata/m6A_mm10_exomePeak_1000peaks_bed12.bed
Guitar/inst/extdata/mm10_toy.sqlite
Guitar/inst/extdata/others
Guitar/inst/extdata/others/hg19_toy.gtf.gz
Guitar/inst/extdata/others/mightUseful.R
Guitar/man
Guitar/man/BED12toGRangesList.Rd Guitar/man/Guitar-package.Rd Guitar/man/GuitarPlot.Rd Guitar/man/combinedGuitarPlot.Rd Guitar/man/getNeighborhood.Rd Guitar/man/makeGuitarCoordsFromGRangesList.Rd Guitar/man/makeGuitarCoordsFromTxDb.Rd Guitar/man/narrowPeaktoGRanges.Rd
Guitar/vignettes
Guitar/vignettes/Guitar-Overview.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.