Guitar: Guitar

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The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

Author
Jia Meng
Date of publication
None
Maintainer
Jia Meng <jia.meng@xjtlu.edu.cn>
License
GPL-2
Version
1.12.0

View on Bioconductor

Man pages

BED12toGRangesList
BED12toGRangesList
combinedGuitarPlot
combinedGuitarPlot
getNeighborhood
getNeighborhood
Guitar-package
Guitar
GuitarPlot
GuitarPlot
makeGuitarCoordsFromGRangesList
makeGuitarCoordsFromGRangesList
makeGuitarCoordsFromTxDb
makeGuitarCoordsFromTxDb
narrowPeaktoGRanges
narrowPeaktoGRanges

Files in this package

Guitar/DESCRIPTION
Guitar/NAMESPACE
Guitar/R
Guitar/R/BED12toGRangesList.R
Guitar/R/GuitarPlot2.R
Guitar/R/combinedGuitarPlot.R
Guitar/R/getNeighborhood.R
Guitar/R/makeGuitarCoordsFromGRangesList.R
Guitar/R/makeGuitarCoordsFromTxDb.R
Guitar/R/multiplot.R
Guitar/R/narrowPeak2GRanges.R
Guitar/README.md
Guitar/build
Guitar/build/vignette.rds
Guitar/inst
Guitar/inst/CITATION
Guitar/inst/NEWS
Guitar/inst/doc
Guitar/inst/doc/Guitar-Overview.R
Guitar/inst/doc/Guitar-Overview.Rnw
Guitar/inst/doc/Guitar-Overview.pdf
Guitar/inst/extdata
Guitar/inst/extdata/866991_part.bam
Guitar/inst/extdata/866992_part.bam
Guitar/inst/extdata/DNAm5C_mm10_10000sites_bismark.cov
Guitar/inst/extdata/H3K4me3_mm10_1000peaks.bed
Guitar/inst/extdata/RNAm5C_mm10_10000sites_bismark.cov
Guitar/inst/extdata/hg19_toy.sqlite
Guitar/inst/extdata/m6A_hg19_1000peaks_macs2.narrowPeak
Guitar/inst/extdata/m6A_mm10_exomePeak_1000peaks_bed12.bed
Guitar/inst/extdata/mm10_toy.sqlite
Guitar/inst/extdata/others
Guitar/inst/extdata/others/hg19_toy.gtf.gz
Guitar/inst/extdata/others/mightUseful.R
Guitar/man
Guitar/man/BED12toGRangesList.Rd
Guitar/man/Guitar-package.Rd
Guitar/man/GuitarPlot.Rd
Guitar/man/combinedGuitarPlot.Rd
Guitar/man/getNeighborhood.Rd
Guitar/man/makeGuitarCoordsFromGRangesList.Rd
Guitar/man/makeGuitarCoordsFromTxDb.Rd
Guitar/man/narrowPeaktoGRanges.Rd
Guitar/vignettes
Guitar/vignettes/Guitar-Overview.Rnw