Guitar: Guitar

The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Guitar")
AuthorJia Meng
Bioconductor views Alignment Coverage DataImport MethylSeq QualityControl RNASeq Sequencing SplicedAlignment Transcription
Date of publicationNone
MaintainerJia Meng <jia.meng@xjtlu.edu.cn>
LicenseGPL-2
Version1.12.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/BED12toGRangesList.R R/GuitarPlot2.R R/combinedGuitarPlot.R R/getNeighborhood.R R/makeGuitarCoordsFromGRangesList.R R/makeGuitarCoordsFromTxDb.R R/multiplot.R R/narrowPeak2GRanges.R
README.md
build
build/vignette.rds
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/Guitar-Overview.R
inst/doc/Guitar-Overview.Rnw
inst/doc/Guitar-Overview.pdf
inst/extdata
inst/extdata/866991_part.bam
inst/extdata/866992_part.bam
inst/extdata/DNAm5C_mm10_10000sites_bismark.cov
inst/extdata/H3K4me3_mm10_1000peaks.bed
inst/extdata/RNAm5C_mm10_10000sites_bismark.cov
inst/extdata/hg19_toy.sqlite
inst/extdata/m6A_hg19_1000peaks_macs2.narrowPeak
inst/extdata/m6A_mm10_exomePeak_1000peaks_bed12.bed
inst/extdata/mm10_toy.sqlite
inst/extdata/others
inst/extdata/others/hg19_toy.gtf.gz
inst/extdata/others/mightUseful.R
man
man/BED12toGRangesList.Rd man/Guitar-package.Rd man/GuitarPlot.Rd man/combinedGuitarPlot.Rd man/getNeighborhood.Rd man/makeGuitarCoordsFromGRangesList.Rd man/makeGuitarCoordsFromTxDb.Rd man/narrowPeaktoGRanges.Rd
vignettes
vignettes/Guitar-Overview.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.