bamsignals: Extract read count signals from bam files

This package allows to efficiently obtain count vectors from indexed bam files. It counts the number of reads in given genomic ranges and it computes reads profiles and coverage profiles. It also handles paired-end data.

AuthorAlessandro Mammana [aut, cre], Johannes Helmuth [aut]
Date of publicationNone
MaintainerAlessandro Mammana <mammana@molgen.mpg.de>
LicenseGPL-2
Version1.6.0

View on Bioconductor

Files in this package

bamsignals/DESCRIPTION
bamsignals/NAMESPACE
bamsignals/NEWS
bamsignals/R
bamsignals/R/RcppExports.R bamsignals/R/wrappers.R bamsignals/R/zzzCountSignals.R
bamsignals/README.md
bamsignals/build
bamsignals/build/vignette.rds
bamsignals/inst
bamsignals/inst/doc
bamsignals/inst/doc/bamsignals.R
bamsignals/inst/doc/bamsignals.Rmd
bamsignals/inst/doc/bamsignals.html
bamsignals/inst/examples
bamsignals/inst/examples/class_example.R
bamsignals/inst/examples/methods_example.R
bamsignals/inst/extdata
bamsignals/inst/extdata/randomAnnot.Rdata
bamsignals/inst/extdata/randomBam.bam
bamsignals/inst/extdata/randomBam.bam.bai
bamsignals/man
bamsignals/man/CountSignals-class.Rd bamsignals/man/as.list.CountSignals.Rd bamsignals/man/bamsignals-methods.Rd bamsignals/man/bamsignals.Rd
bamsignals/scripts
bamsignals/scripts/generateCode.R
bamsignals/src
bamsignals/src/CountSignals.cpp
bamsignals/src/Makevars
bamsignals/src/Makevars.win
bamsignals/src/RcppExports.cpp
bamsignals/src/bamsignals.cpp
bamsignals/src/bamsignals_init.c
bamsignals/tests
bamsignals/tests/testthat
bamsignals/tests/testthat.R
bamsignals/tests/testthat/randomReads.RData
bamsignals/tests/testthat/test_CountSignals.R
bamsignals/tests/testthat/test_methods.R
bamsignals/tests/testthat/utils.R
bamsignals/vignettes
bamsignals/vignettes/bamsignals.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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