bamsignals: Extract read count signals from bam files

This package allows to efficiently obtain count vectors from indexed bam files. It counts the number of reads in given genomic ranges and it computes reads profiles and coverage profiles. It also handles paired-end data.

Package details

AuthorAlessandro Mammana [aut, cre], Johannes Helmuth [aut]
Bioconductor views Alignment Coverage DataImport Sequencing
MaintainerJohannes Helmuth <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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bamsignals documentation built on Nov. 8, 2020, 5:17 p.m.