API for bamsignals
Extract read count signals from bam files
| Global functions | |
|---|---|
| CountSignals | Man page |
| CountSignals-class | Man page |
| [,CountSignals,ANY-method | Man page |
| alignSignals | Man page |
| alignSignals,CountSignals-method | Man page |
| as.list | Man page |
| as.list,CountSignals-method | Man page |
| as.list.CountSignals | Man page Source code |
| bamCount | Man page |
| bamCount,character,GenomicRanges-method | Man page |
| bamCoverage | Man page |
| bamCoverage,character,GenomicRanges-method | Man page |
| bamProfile | Man page |
| bamProfile,character,GenomicRanges-method | Man page |
| bamsignals | Man page |
| bamsignals-methods | Man page |
| bamsignals-package | Man page |
| checkList | Source code |
| coverage_core | Source code |
| fastWidth | Source code |
| flagMask | Source code |
| length | Man page |
| length,CountSignals-method | Man page |
| pileup_core | Source code |
| printStupidSentence | Source code |
| showCountSignals | Source code |
| showCounts | Source code |
| tlenFilter | Source code |
| width | Man page |
| width,CountSignals-method | Man page |
| writeSamAsBamAndIndex | Source code |
