BadRegionFinder: BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
Version 1.4.0

BadRegionFinder is a package for identifying regions with a bad, acceptable and good coverage in sequence alignment data available as bam files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.

Package details

AuthorSarah Sandmann
Bioconductor views Alignment Classification Coverage Sequencing WholeGenome
MaintainerSarah Sandmann <[email protected]>
LicenseLGPL-3
Version1.4.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("BadRegionFinder")

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BadRegionFinder documentation built on May 31, 2017, 11:19 a.m.