BadRegionFinder: BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

BadRegionFinder is a package for identifying regions with a bad, acceptable and good coverage in sequence alignment data available as bam files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.

Package details

AuthorSarah Sandmann
Bioconductor views Alignment Classification Coverage Sequencing WholeGenome
MaintainerSarah Sandmann <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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BadRegionFinder documentation built on Nov. 8, 2020, 5:24 p.m.