Man pages for BadRegionFinder
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

BadRegionFinder-packageBadRegionFinder: an R/Bioconductor package for identifying...
determineCoverageDetermines the coverage (recommended for whole-genome...
determineCoverageQualityClassifies the determined coverage
determineQuantilesDetermines basewise user-defined quantiles
determineRegionsOfInterestDetermines the regions of interest
plotDetailedPlots a more detailed overview of the coverage quality
plotSummaryPlots a summary of the coverage quality
plotSummaryGenesPlots a summary of the coverage quality concerning the genes...
reportBadRegionsDetailedGives a detailed report on the coverage quality
reportBadRegionsGenesSums up the coverage quality on a gene basis
reportBadRegionsSummarySums up the coverage quality
BadRegionFinder documentation built on Nov. 8, 2020, 5:24 p.m.