|BadRegionFinder-package||BadRegionFinder: an R/Bioconductor package for identifying...|
|determineCoverage||Determines the coverage (recommended for whole-genome...|
|determineCoverageQuality||Classifies the determined coverage|
|determineQuantiles||Determines basewise user-defined quantiles|
|determineRegionsOfInterest||Determines the regions of interest|
|plotDetailed||Plots a more detailed overview of the coverage quality|
|plotSummary||Plots a summary of the coverage quality|
|plotSummaryGenes||Plots a summary of the coverage quality concerning the genes...|
|reportBadRegionsDetailed||Gives a detailed report on the coverage quality|
|reportBadRegionsGenes||Sums up the coverage quality on a gene basis|
|reportBadRegionsSummary||Sums up the coverage quality|
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