amplican: Automated analysis of CRISPR experiments

`amplican` performs alignment of the amplicon reads, normalizes gathered data, calculates multiple statistics (e.g. cut rates, frameshifts) and presents results in form of aggregated reports. Data and statistics can be broken down by experiments, barcodes, user defined groups, guides and amplicons allowing for quick identification of potential problems.

Package details

AuthorKornel Labun [aut], Eivind Valen [cph, cre]
Bioconductor views Alignment CRISPR ImmunoOncology Technology qPCR
MaintainerEivind Valen <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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amplican documentation built on Nov. 8, 2020, 11:10 p.m.