getEventInfo: This function takes alignments and gives back the events...
In amplican: Automated analysis of CRISPR experiments
Description
Usage
Arguments
Value
View source: R/helpers_general.R
Description
This function takes alignments and gives back the events coordinates.
Usage
1
getEventInfo(align, ID, ampl_shift, strand_info = "+")
Arguments
align
(PairwiseAlignmentsSingleSubject)
ID
(string)
ampl_shift
(numeric vector) Shift events additionally by this value.
PairwiseAlignmentsSingleSubject returns truncated alignments.
strand_info
(string) Either '+', '-' or default '*'
ampl_len
(numeric) Length of the amplicon (subject)
Value
(GRanges) Object with meta-data for insertion,
deletion, mismatch
amplican documentation built on Nov. 8, 2020, 11:10 p.m.
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Description Usage Arguments Value
View source: R/helpers_general.R
Description
This function takes alignments and gives back the events coordinates.
Usage
1 | getEventInfo(align, ID, ampl_shift, strand_info = "+")
|
Arguments
align |
( |
ID |
(string) |
ampl_shift |
(numeric vector) Shift events additionally by this value. PairwiseAlignmentsSingleSubject returns truncated alignments. |
strand_info |
(string) Either '+', '-' or default '*' |
ampl_len |
(numeric) Length of the amplicon (subject) |
Value
(GRanges) Object with meta-data for insertion,
deletion, mismatch
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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