checkConfigFile: Pre-process a config file and checks that everything is in...

Description Usage Arguments Value

View source: R/helpers_warnings.R

Description

Its takes care of the following: No IDs are duplicated. Every combination of barcode, forward primer and reverse primer is unique. Each barcode has unique forward reads file and reverse read files. Checks that the read files exist with read access.

Usage

1
checkConfigFile(configTable, fastq_folder)

Arguments

configTable

(data.frame) Config file.

fastq_folder

(string) Path to fastq folder.

Value

(boolean) TRUE, If anything goes wrong stops and prints error.


amplican documentation built on July 8, 2020, 9:22 p.m.