amplican: Automated analysis of CRISPR experiments.

Description Details Author(s) See Also


Main goals:

  1. Flexible pipeline for analysis of the CRISPR Mi-Seq or Hi-Seq data.

  2. Compatible with GRanges and data.table style.

  3. Precise quantification of mutation rates.

  4. Prepare automatic reports as .Rmd files that are flexible and open for manipulation.

  5. Provide specialized plots for deletions, insertions, mismatches, variants, heterogeneity of the reads.


To learn more about amplican, start with the vignettes: browseVignettes(package = "amplican")


Maintainer: Eivind Valen [copyright holder]


See Also

Useful links:

amplican documentation built on Nov. 8, 2020, 11:10 p.m.